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I have a planted tropical community tank which has a layer of roughly 3cm of fine sand substrate. I've read a lot about anaerobic gas build-up in the substrate where it is not regularly turned over and moved. When I shift the sand I get very small bubbles rising. This has been happening for a while and it doesn't seem to have a negative impact on my tank.

I've read from various, different sources that anaerobic gas (Hydrogen Sulphide) can prove toxic to fish but I've so far, not found this happen in practice (my fish are fit and healthy).

Some of the 'solutions' to this problem, suggested with varying levels of controversy across the internet, include:

  • Having a thin layer of substrate
  • Using gravel not sand
  • Regularly disturbing the sand to stop the build up
  • Increasing water changes to handle the toxic nature of the gas
  • Get snails to stir up the sand

None of these necessarily seem like a perfect solution. In a planted tank, I rely on having enough substrate to create a stable foundation for the plants. Compost/sand definitely seems to grow them best. Gravel lets us easily stir through it to remove any of detritus that is underneath but doesn't hold plant roots well (at least in my experience). I also have some snails which live in the substrate and I would assume that they help stir the substrate up.

With all this in mind:

What is the best way to prevent anaerobic gas build-up in a planted aquarium, assuming it is in issue?

Image of gas bubbles/snails in substrate

  • this might be a stupid comment but fresh water mussels do walk around in the sand and this is what you want i belive,you will proably ned to put the plants that do come loose down in the sand again from time to time,and the tank needs to be 150liters+ depending on the size of the mussels. – trond hansen Aug 27 '17 at 16:36
  • I'd probably prefer not adding other animals to my tank. I'm more looking for a way to prevent this or if there is some other technique that I'm yet to try that has proved successful for someone else. – Henders Aug 29 '17 at 8:22
  • i do understand you not wanting to put more animals in the tank,the trouble is your question is more complicated then it looks at first,i did consider a lot of options but none of them was any good. – trond hansen Aug 29 '17 at 8:56
  • H2S is toxic to about any animal. I don't release the H2S by stiring the gravel /sand in my aquariums . – blacksmith37 Aug 31 '17 at 1:39
  • @blacksmith37 If you are regularly stirring your gravel, this means that it can't build up so there is nothing to actually release, right? I'm just not sure how to do this with a planted aquarium... The roots run around the tank quite a bit. – Henders Aug 31 '17 at 8:11
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Had this worry some years ago. My solution: use a chopstick or the blunt end of a wooden skewer and run it through the substrate every other day. I never had an issue with a build up of toxic gases. By the way, small bubbles are not a cause of concern; it would have to be a bubble the size of an orange that would be and you'd smell it too.

  • I would have thought the opposite in terms of bubble size. To dissolve gas in water, the smaller the bubble, the better it dissolves. Do you think the chopstick would work with a planted tank? I think I'd end up pulling up a bunch of roots with it instead... – Henders Nov 29 '17 at 23:09
  • Completely understand your reasoning about bubble size and how smaller dissolves better in water. When I mentioned smaller bubbles are not a cause of concern, a major concern is what I should have said. That's is because a bigger bubble is going to be a bigger build up and when that bigger bubble is released, that's a bigger amount of toxic gas to deal with. when you're at that stage of having BIG bubble of anaerobic gas being released, then your not only does the tank substrate really needs stirring up but most likely there's been some fish casualties. – Jarl Axle Nov 30 '17 at 18:28
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    Also, I never dragged the chopstick through the substrate (sand in my case at the time) but rather carefully stirred the sand in small circular areas. Think size of a quater. Later when I had more plants and switched to the skewer, those circular stirrings were about the size of a toothpaste cap. – Jarl Axle Nov 30 '17 at 18:34

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